9M2M image
Deposition Date 2025-02-27
Release Date 2026-03-04
Last Version Date 2026-04-08
Entry Detail
PDB ID:
9M2M
Keywords:
Title:
the crystal structure of okaE
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron/alpha-ketoglutarate-depe
Chain IDs:A, B, C, D
Chain Length:298
Number of Molecules:4
Biological Source:Penicillium simplicissimum
Ligand Molecules
Primary Citation
Structural and mechanistic insights into azetidine-associated alpha KG-NHFe enzyme OkaE with multifunctional catalysis.
Nat Commun 17 ? ? (2026)
PMID: 41702921 DOI: 10.1038/s41467-026-69519-5

Abstact

alpha-Ketoglutarate-dependent mononuclear non-haem iron (alphaKG-NHFe) enzymes are catalytically versatile, yet OkaE is unique for synthesizing azetidine rings via C-C bond formation. Here, we report the unexpected multifunctionality of OkaE, which catalyzes sequential oxidations. Isotopic labelling studies demonstrate that a second O(2) molecule participates in sequential epoxidation and ring cleavage, incorporating two oxygen atoms within a single catalytic cycle to form the previously unknown structure, neuokaramine IV. Crystal structures of the OkaE*Co(II)*alphaKG*okaramine A complex unveil a unique methionine-pi interaction network that facilitates substrate binding. Mutational and crystallographic analyses suggest this network fine-tunes substrate orientation relative to the metallo-centre, activating distinct reaction pathways at the 3a-OH or C8a positions. QM/MM simulations indicate that dynamic rotation of the Fe(IV)=O species initiates the cycle, enabling reaction bifurcation. This study elucidates the structural and mechanistic basis of OkaE's reactivity, highlighting its potential as a programmable biocatalyst for natural product diversification.

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Primary Citation of related structures
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