ISDA: 9LOX

Deposition Date 2025-01-23

Release Date 2026-07-29

Last Version Date 2026-07-29

Entry Detail

PDB ID:

9LOX

Keywords:

DNA BINDING PROTEIN

Title:

Cryo-EM structure of the chromatin remodeler Rad26 bound to the nucleosome at SHL6

Biological Source:

Source Organism(s):

Komagataella phaffii (Taxon ID: 460519)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):PAS_chr2-2_0199
Chain IDs:A, E
Chain Length:140
Number of Molecules:2
Biological Source:Komagataella phaffii

UniProt ID:C4R2J7 Pfam ID:PF00125

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):PAS_chr2-2_0200
Chain IDs:B, F
Chain Length:106
Number of Molecules:2
Biological Source:Komagataella phaffii

UniProt ID:C4R2J6 Pfam ID:PF15511

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):PAS_chr2-1_0429
Chain IDs:C, G
Chain Length:133
Number of Molecules:2
Biological Source:Komagataella phaffii

UniProt ID:C4R0M8 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B
Gene (Uniprot):PAS_chr2-1_0428
Chain IDs:D, H
Chain Length:135
Number of Molecules:2
Biological Source:Komagataella phaffii

UniProt ID:C4R0M7 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:I
Chain Length:169
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:J
Chain Length:169
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA repair protein
Gene (Uniprot):RAD26
Chain IDs:K
Chain Length:1094
Number of Molecules:1
Biological Source:Komagataella phaffii

UniProt ID:F2QSG0

Ligand Molecules

Primary Citation

Structural basis of the nucleosome remodeling by a Cockayne syndrome B homologue Komagataella phaffii Rad26

Fukushima, Y, Takizawa, Y, Ogasawara, M, Kinoshita, C, Haruhiko, E, Sekine, S, Kagawa, W, Kurumizaka, H.Show

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Primary Citation of related structures

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