9LI6 image
Deposition Date 2025-01-13
Release Date 2025-12-24
Last Version Date 2026-07-08
Entry Detail
PDB ID:
9LI6
Title:
Structure of ABCC2(E1404Q) in Arabidopsis thaliana in the DNP-GS bound state
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.49 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ABC transporter C family memb
Gene (Uniprot):ABCC2
Mutagens:E1404Q
Chain IDs:A, B
Chain Length:0
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Structural insights into toxicant export mediated by ABCC2 in Arabidopsis thaliana.
Nat Commun 16 11554 11554 (2025)
PMID: 41430060 DOI: 10.1038/s41467-025-67713-5

Abstact

Plants are highly vulnerable to damage from environmental pollutants, making detoxification mechanisms essential for sustaining growth and development. ABCC2 in Arabidopsis thaliana (AtABCC2) plays a critical role in detoxification by exporting diverse toxic compounds. Here, we report the structures of AtABCC2 in three distinct states: substrate-free, bound to the substrate S-(2,4-dinitrophenyl)glutathione (DNP-GS), and bound to ATP. Both monomeric and dimeric forms of AtABCC2 are observed. Unlike other dimeric ABCC homologs, AtABCC2 features a dimer interface mediated by its transmembrane domains. DNP-GS occupies an amphipathic cavity formed by the transmembrane domains. ATP binding drives the conformational changes in each protomer which bring the transmembrane and nucleotide-binding domains closer together, transitioning the transporter from a cytosolic-facing to an occluded state. Together, these findings advance our understanding of the molecular basis of substrate binding and transport by AtABCC2, and shed light on plant detoxification mechanisms.

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Primary Citation of related structures
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