9LF7 image
Deposition Date 2025-01-08
Release Date 2025-02-19
Last Version Date 2025-02-19
Entry Detail
PDB ID:
9LF7
Keywords:
Title:
A PAE-hydrolyse Poc14
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.17
R-Value Work:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Poc14_A
Chain IDs:A, B
Chain Length:336
Number of Molecules:2
Biological Source:Erythrobacter cryptus DSM 12079
Ligand Molecules
Primary Citation
Molecular Insight Into the Hydrolysis of Phthalate Esters by a Family IV Esterase.
Environ.Microbiol. 27 e70134 e70134 (2025)
PMID: 40600832 DOI: 10.1111/1462-2920.70134

Abstact

Phthalate esters (PAEs) are prevalent environmental contaminants, with their biodegradation efficiently driven by microorganisms through ester bond hydrolysis. This study investigates the mechanism of Poc14, a novel family IV esterase, using x-ray crystallography, bioinformatics, biochemistry and site-directed mutagenesis. Phylogenetic analysis classifies Poc14 as a family IV esterase with conserved catalytic motifs crucial for its activity. Poc14 retains over 80% activity at 50°C for 4 h and tolerates up to 5% methanol or DMF, though surfactants like Tweens inhibit its function. Poc14 activity is independent of metal ions, and the addition of EDTA further enhances its activity by approximately 130%. The 1.8 Å crystal structure reveals a CAP domain and two substrate channels. Enzyme assays show Poc14 hydrolyses short-chain diethyl phthalate (DEP) (Km = 0.068 mM, Vmax = 9975 μM/min/mg) but not long-chain di(2-ethylhexyl) phthalate (DEHP) due to steric hindrance. Molecular docking assessed Poc14's potential to hydrolyse DEP and DEHP after residue mutations, resulting in the Poc14-AAG variant. Poc14-AAG could hydrolyse one bond of DEHP and diester bonds of DEP. Our study positions Poc14 as a promising enzyme for environmental remediation, with potential for optimising DEHP degradation and exploring dimerisation effects.

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Primary Citation of related structures
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