9L64 image
Deposition Date 2024-12-24
Release Date 2026-01-07
Last Version Date 2026-04-01
Entry Detail
PDB ID:
9L64
Keywords:
Title:
A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-(1,6)-fucosyltransferas
Gene (Uniprot):FUT8
Chain IDs:A, B
Chain Length:499
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Exploiting human fucosyltransferase 8 allostery with a covalent inhibitor for core fucosylation suppression.
Nat Commun 17 ? ? (2026)
PMID: 41667477 DOI: 10.1038/s41467-026-68971-7

Abstact

Core fucosylation, catalyzed by fucosyltransferase 8 (FUT8), plays critical roles in cancer progression, immune evasion, and drug resistance, making it a compelling therapeutic target. However, development of selective FUT8 inhibitors has been hindered by shared substrate specificity of fucosyltransferases. Here, we report the discovery of a previously unrecognized allosteric site on FUT8 and the development of a low-toxicity covalent inhibitor, CAIF (stearic acid-N-hydroxysuccinimide ester-dimethylimidazolium bromide), through structure-based drug design. High-throughput screening and crystallographic studies reveal that small molecules such as NH125 bind to a channel-like allosteric pocket, inducing conformational changes that disrupt FUT8 activity. Leveraging these insights, we design CAIF to covalently target lysine K216 within the allosteric site. CAIF exhibits minimal cytotoxicity and significantly inhibits core fucosylation and cancer cell invasion in cellular assays. This work establishes CAIF as a lead compound for further optimization and development, offering a framework for targeting glycosyltransferases through allosteric and covalent inhibition strategies.

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Chemical

Disease

Primary Citation of related structures
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