ISDA: 9L06

Deposition Date 2024-12-11

Release Date 2026-06-17

Last Version Date 2026-06-17

Entry Detail

PDB ID:

9L06

Keywords:

DNA BINDING PROTEIN

Title:

The cryo-EM structure of ATRX in complex with the nucleosome in the ADP.BeFx-bound state (composite)

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)

Expression System(s):

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.40 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.3
Gene (Uniprot):H3-3A, H3-3B
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P84243 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B
Chain Length:87
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-C
Gene (Uniprot):H2AC6
Chain IDs:C, G
Chain Length:130
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q93077 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-C/E/F/G/I
Gene (Uniprot):H2BC4, H2BC6, H2BC7, H2BC8, H2BC10
Chain IDs:D, H
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62807 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:F
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (207-MER)
Chain IDs:I
Chain Length:207
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (207-MER)
Chain IDs:J
Chain Length:207
Number of Molecules:1
Biological Source:Homo sapiens

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcriptional regulator ATR
Gene (Uniprot):ATRX
Chain IDs:K
Chain Length:1260
Number of Molecules:1
Biological Source:Homo sapiens