9KGM image
Deposition Date 2024-11-08
Release Date 2025-11-12
Last Version Date 2026-04-22
Entry Detail
PDB ID:
9KGM
Keywords:
Title:
Complex structure of OsHPPD with MBQ
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.29
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:4-hydroxyphenylpyruvate dioxy
Gene (Uniprot):OSJNBa0085K21.52, P0669G09.6
Chain IDs:A, B
Chain Length:446
Number of Molecules:2
Biological Source:Oryza sativa subsp. japonica
Primary Citation
Structure-Based Directed Evolution of Rice 4-Hydroxyphenylpyruvate Dioxygenase Confers Enhanced Herbicide Tolerance.
J. Agric. Food Chem. 73 18923 18931 (2025)
PMID: 40668751 DOI: 10.1021/acs.jafc.5c06678

Abstact

Precise gene modification is pivotal in molecular breeding. 4-Hydroxyphenylpyruvate dioxygenase (HPPD) plays a crucial role in the development of herbicide-resistant crops. But how to modify HPPD and thereby confer herbicide resistance in plants remains unclear. This research delineates the structure of Oryza sativa HPPD (OsHPPD) complexed with Methyl-Benquitrione (MBQ) and identifies potential residues that confer herbicide resistance. Enzymatic tests of the C-terminal alpha9 helix variants showed that K418D, E423Q, E423M, E423S, E423T, E423L, E423W, E432I, E432M, E432W, and E432F demonstrated preserved catalytic efficiency. The herbicide resistance test displayed that K418D, E423Q, E423M, E432I, and E432M acquired 1.5- to 3-fold enhancements against mesotrione, topramezone, MBQ, and A1 in vitro. Especially, the forced expression of E432M in Arabidopsis thaliana significantly elevated herbicide resistance compared to the wild type. These findings highlight the potential of specific OsHPPD modifications in developing crops with enhanced herbicide resistance, providing a foundation for future genetic engineering strategies.

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Primary Citation of related structures
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