9K9K image
Deposition Date 2024-10-26
Release Date 2026-04-22
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9K9K
Keywords:
Title:
Cryo-EM structure of circular intron of Anabaena tRNA(Leu) precursor
Biological Source:
Source Organism(s):
Anabaena (Taxon ID: 1163)
Method Details:
Experimental Method:
Resolution:
3.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (249-MER)
Chain IDs:A
Chain Length:249
Number of Molecules:1
Biological Source:Anabaena
Ligand Molecules
Primary Citation
Self-splicing and cyclization mechanisms of the full-length Anabaena pre-tRNA.
Nat.Chem.Biol. ? ? ? (2026)
PMID: 41981295 DOI: 10.1038/s41589-026-02205-1

Abstact

Group I introns are catalytic RNAs capable of self-splicing and generating circular RNAs, processes central to RNA metabolism and biotechnology. Yet, full-length ribozyme structures containing entire exon sequences and the structural basis of postsplicing circularization have remained limited. Using cryo-electron microscopy, we resolved multiple conformational states of the full-length Anabaena tRNA(Leu) precursor, capturing key intermediates of splicing and cyclization. In the apo state, the exons preassemble into a mature tRNA-like conformation that promotes P1 helix formation. Transitions through the splicing states involve substantial rearrangements essential for catalysis. Unlike other group I introns, the Anabaena intron circularizes without sequence loss, using its guanosine-binding site as the catalytic center. Mutational analyses confirm that G37 reorientation and a conserved wobble receptor motif precisely position the circularization site, driving efficient cyclization even in engineered PIE systems. These findings uncover unique mechanisms of RNA catalysis and establish structure-based optimization for advancing RNA circularization technologies.

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Primary Citation of related structures
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