9K3Q image
Deposition Date 2024-10-19
Release Date 2024-12-04
Last Version Date 2026-06-17
Entry Detail
PDB ID:
9K3Q
Keywords:
Title:
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein B-87
Chain IDs:A (auth: 1), C (auth: 3), E (auth: 5), G (auth: 7), I (auth: 9), P (auth: I), R (auth: K), V (auth: O), W (auth: Q), Y (auth: S), AA (auth: U), CA (auth: W), EA (auth: Y), GA (auth: d), HA (auth: m), IA (auth: n)
Chain Length:44
Number of Molecules:16
Biological Source:Rhodospirillum rubrum
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein B-87
Chain IDs:B (auth: 2), D (auth: 4), F (auth: 6), H (auth: 8), J (auth: A), K (auth: D), L (auth: E), M (auth: F), N (auth: G), Q (auth: J), U (auth: N), X (auth: R), Z (auth: T), BA (auth: V), DA (auth: X), FA (auth: Z)
Chain Length:45
Number of Molecules:16
Biological Source:Rhodospirillum rubrum
Polymer Type:polypeptide(L)
Molecule:Photoreaction center protein
Chain IDs:O (auth: H)
Chain Length:255
Number of Molecules:1
Biological Source:Rhodospirillum rubrum
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L cha
Gene (Uniprot):pufL
Chain IDs:S (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:Rhodospirillum rubrum
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M cha
Chain IDs:T (auth: M)
Chain Length:259
Number of Molecules:1
Biological Source:Rhodospirillum rubrum
Primary Citation
Characterization of the Structure and Function of the Photosynthetic RC-LH1 Core Supercomplex From Rhodospirillum rubrum.
Physiol.Plantarum 177 e70275 e70275 (2025)
PMID: 40384483 DOI: 10.1111/ppl.70275

Abstact

Photosynthetic reaction center-light harvesting 1 (RC-LH1) core supercomplexes are essential for energy capture and electron transport in purple bacteria. Rhodospirillum rubrum, a model organism for bacterial photosynthesis, features an RC-LH1 architecture with a closed LH1 ring and lacks the peripheral LH2 antenna in the photosynthetic membranes. How this unique RC-LH1 supercomplex performs energy transfer and quinone transport remains unclear. Here, we characterized both the structural and functional properties of Rsp. rubrum RC-LH1 supercomplex using cryo-electron microscopy (cryo-EM), transient absorption (TA) spectroscopy, and cytochrome c(2) oxidation assays. Cryo-EM of the RC-LH1 monomeric structure revealed a closed LH1 ring of 16 alphabeta-polypeptides encircling the RC, with weaker RC-LH1 interactions than other RC-LH1 structures reported. TA spectra and cytochrome c(2) oxidation assays showed that Rsp. rubrum RC-LH1 monomer with a closed LH1 ring exhibits slower and more distributed excitation energy transfer (EET) kinetics from LH1 to RC and slower electron transport rates than Rba. sphaeroides RC-LH1 monomer with a large opening in the LH1 ring. Our findings provide insight into the unique architecture and spectroscopic properties of Rsp. rubrum RC-LH1 supercomplex. This study enhances our understanding of bacterial photosynthetic mechanisms and lays the foundation for bioengineering applications in artificial photosynthetic systems.

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Primary Citation of related structures
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