9J4P image
Deposition Date 2024-08-09
Release Date 2025-07-30
Last Version Date 2026-08-12
Entry Detail
PDB ID:
9J4P
Title:
Regulatory domain and kinase domain of ALPK1 protein
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-protein kinase 1
Gene (Uniprot):Alpk1
Chain IDs:B (auth: A)
Chain Length:0
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Alpha-protein kinase 1
Gene (Uniprot):ALPK1
Chain IDs:A (auth: B)
Chain Length:0
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of a selective alpha-kinase 1 inhibitor for the rare genetic disease ROSAH syndrome.
Nat Commun 16 8251 8251 (2025)
PMID: 40925900 DOI: 10.1038/s41467-025-63731-5

Abstact

ROSAH (retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and headache) syndrome is a rare genetic disease caused by variants in alpha-kinase 1 (ALPK1) resulting in downstream pro-inflammatory signaling mediated by the TIFA/TRAF6/NF-kappaB pathway. Here, we report the design of an ALPK1 inhibitor, DF-003, with pharmacokinetic properties suitable for daily oral dosing. In biochemical assays, DF-003 potently inhibits human ALPK1 (IC(50) = 1.5 nM) and the ROSAH disease-causing mutant ALPK1[T237M] (IC(50) = 16 nM). When tested against a panel of 394 human kinases, DF-003 exhibits >/=860-fold selectivity over the closest kinase. In cell-based assays, DF-003 suppresses inflammatory cytokine signaling mediated both by wild-type ALPK1 and the disease-causing ALPK1[T237M] mutant. Using mice heterozygous for wild-type human ALPK1 and ALPK1(T237M) established to model ROSAH syndrome that exhibit retinal microglial infiltration, astrocyte activation, and inflammatory cytokine upregulation in the retina, optic nerve, and cortex, we show that orally administered DF-003 is sufficient to inhibit these inflammatory phenotypes.

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Primary Citation of related structures
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