9I1R image
Deposition Date 2025-01-16
Release Date 2025-07-02
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9I1R
Keywords:
Title:
Structure of the bicylindrical allophycocyanin core expressed during far-red light photoacclimation (FaRLiP)
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.51 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1032
Chain IDs:A, E, G, M, O, Q, T, V, X, Z (auth: a), DA (auth: e), FA (auth: g), LA (auth: m), NA (auth: o), PA (auth: q), SA (auth: t), UA (auth: v), WA (auth: x)
Chain Length:158
Number of Molecules:18
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin beta subunit
Gene (Uniprot):Chro_1033
Chain IDs:B, D, F, H, L, N, P, R, U, W, Y, AA (auth: b), CA (auth: d), EA (auth: f), GA (auth: h), KA (auth: l), MA (auth: n), OA (auth: p), QA (auth: r), TA (auth: u), VA (auth: w), XA (auth: y)
Chain Length:161
Number of Molecules:22
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1036
Chain IDs:C, BA (auth: c)
Chain Length:175
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1034
Chain IDs:I, HA (auth: i)
Chain Length:159
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin beta-18 subun
Gene (Uniprot):Chro_1766
Chain IDs:J, IA (auth: j)
Chain Length:169
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycobiliprotein ApcE
Gene (Uniprot):Chro_1035
Chain IDs:K, JA (auth: k)
Chain Length:780
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycobilisome 7.8 kDa linker
Gene (Uniprot):Chro_4322
Chain IDs:S, RA (auth: s)
Chain Length:67
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN B, D, F, H, J, L, N, P, R, U, W, Y, AA, CA, EA, GA, IA, KA, MA, OA, QA, TA, VA, XA ASN modified residue
Ligand Molecules
Primary Citation
Structure of a stripped-down and tuned-up far-red phycobilisome.
Commun Biol 8 907 907 (2025)
PMID: 40494956 DOI: 10.1038/s42003-025-08326-y

Abstact

A diverse subset of cyanobacteria can transiently modify their photosynthetic machinery during far-red light photoacclimation to drive photosynthesis with less energetic photons (700 nm-800 nm). To achieve this, all the main light-driven components of the photosynthetic apparatus, including their allophycocyanin antenna, are replaced with red-shifted paralogues. Recent studies based on the structure of an incomplete complex provided some insights into the tuning of the far-red phycobiliproteins. Here, we solved the structure of the intact bicylindrical allophycocyanin complex from the cyanobacterium Chroococcidiopsis thermalis PCC 7203 at a resolution of 2.51 Å determined by Cryo-electron microscopy single particle analysis. A comparison between conserved structural features in far-red and white light allophycocyanin cores provides insight on the evolutionary adaptations needed to optimize excitation energy transfer in the far-red light adapted photosynthetic apparatus. The reduction in antenna size in far-red photosynthesis suggests a need to optimize membrane packing to increase the number of photosystems and tune the ratio between chlorophyll f molecules and bilin pigments, while the wider spread in the absorption range of the bilins suggests faster and more efficient excitation energy transfer to far-red Photosystem II by limiting backflow of excitation from the reaction centres to the far-red bilin pigments.

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