ISDA: 9HIG

Deposition Date 2024-11-26

Release Date 2026-07-15

Last Version Date 2026-07-15

Entry Detail

PDB ID:

9HIG

Keywords:

RIBOSOME

Title:

Cryo-EM composite structure of 70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis)TAC125.

Biological Source:

Source Organism(s):

Pseudoalteromonas translucida TAC125 (Taxon ID: 326442)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.36 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmG
Chain IDs:Z (auth: 0)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFE7 Pfam ID:PF00471

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmH
Chain IDs:AA (auth: 1)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IK51 Pfam ID:PF00468

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmI
Chain IDs:BA (auth: 2)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IL79 Pfam ID:PF01632

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmJ
Chain IDs:CA (auth: 3)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IC33 Pfam ID:PF00444

Polymer Type:polyribonucleotide
Molecule:16S rRNA
Chain IDs:A
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsB
Chain IDs:B
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IIX4 Pfam ID:PF00318

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsC
Chain IDs:C
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF19 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsD
Chain IDs:D
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJJ5 Pfam ID:PF00163, PF01479

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsE
Chain IDs:E
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK2 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsF
Chain IDs:F
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IIA2 Pfam ID:PF01250

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsG
Chain IDs:G
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3ILP6 Pfam ID:PF00177

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsH
Chain IDs:H
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJJ9 Pfam ID:PF00410

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsI
Chain IDs:I
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IG27 Pfam ID:PF00380

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsJ
Chain IDs:J
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF26 Pfam ID:PF00338

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsK
Chain IDs:K
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK7 Pfam ID:PF00411

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsL
Chain IDs:L
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3ILP7 Pfam ID:PF00164

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsM
Chain IDs:M
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK6 Pfam ID:PF00416

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsN
Chain IDs:N
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJJ8 Pfam ID:PF00253

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsO
Chain IDs:O
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJ74 Pfam ID:PF00312

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsP
Chain IDs:P
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IEC9 Pfam ID:PF00886

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsQ
Chain IDs:Q
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFM3 Pfam ID:PF00366

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsR
Chain IDs:R
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3II81 Pfam ID:PF01084

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsS
Chain IDs:S
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF21 Pfam ID:PF00203

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsT
Chain IDs:T
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IEA5 Pfam ID:PF01649

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsU
Chain IDs:U
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IIB6 Pfam ID:PF01165

Polymer Type:polyribonucleotide
Molecule:P-site tRNA-fMet
Chain IDs:V (auth: W)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:W (auth: X)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:X (auth: a)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:Y (auth: b)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplB
Chain IDs:DA (auth: c)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF22 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplC
Chain IDs:EA (auth: d)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF25 Pfam ID:PF00297

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplD
Chain IDs:FA (auth: e)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF24 Pfam ID:PF00573

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplE
Chain IDs:AB (auth: f)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJJ7 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplF
Chain IDs:GA (auth: g)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK0 Pfam ID:PF00347

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplI
Chain IDs:HA (auth: h)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3II82 Pfam ID:PF01281, PF03948

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplM
Chain IDs:IA (auth: i)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IG26 Pfam ID:PF00572

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplN
Chain IDs:JA (auth: j)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJL9 Pfam ID:PF00238

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplO
Chain IDs:KA (auth: k)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK4 Pfam ID:PF00828

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplP
Chain IDs:LA (auth: l)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF18 Pfam ID:PF00252

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplQ
Chain IDs:MA (auth: m)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJI7 Pfam ID:PF01196

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplR
Chain IDs:NA (auth: n)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK1 Pfam ID:PF00861

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplS
Chain IDs:OA (auth: o)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IEC6 Pfam ID:PF01245

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplT
Chain IDs:PA (auth: p)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IL78 Pfam ID:PF00453

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplU
Chain IDs:QA (auth: q)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFF4 Pfam ID:PF00829

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplV
Chain IDs:RA (auth: r)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF20 Pfam ID:PF00237

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplW
Chain IDs:SA (auth: s)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IF23 Pfam ID:PF00276

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplX
Chain IDs:TA (auth: t)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJJ6 Pfam ID:PF00467, PF17136

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplY
Chain IDs:UA (auth: u)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IK85 Pfam ID:PF01386, PF14693

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmA
Chain IDs:VA (auth: v)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFF5 Pfam ID:PF01016

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmB
Chain IDs:WA (auth: w)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFE6 Pfam ID:PF00830

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmC
Chain IDs:XA (auth: x)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IFM4 Pfam ID:PF00831

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmD
Chain IDs:YA (auth: y)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IJK3 Pfam ID:PF00327

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmF
Chain IDs:ZA (auth: z)
Chain Length:0
Number of Molecules:1
Biological Source:Pseudoalteromonas translucida TAC125

UniProt ID:Q3IHD7 Pfam ID:PF01783

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details
2MA	X	A	modified residue
2MG	A	G	modified residue
4OC	A	C	modified residue
5MC	A	C	modified residue
5MU	X	U	modified residue
G7M	X	G	modified residue
H2U	X	U	modified residue
MA6	A	A	modified residue
OMC	X	C	modified residue
OMG	X	G	modified residue
OMU	X	U	modified residue
UR3	A	U	modified residue