9HEQ image
Deposition Date 2024-11-14
Release Date 2025-09-17
Last Version Date 2026-04-01
Entry Detail
PDB ID:
9HEQ
Title:
Open-state RyR1 in 0.01% POPC micelles, in complex with a nanobody and FKBP12
Biological Source:
Source Organism(s):
Lama glama (Taxon ID: 9844)
Oryctolagus cuniculus (Taxon ID: 9986)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Chain IDs:A, C, G, J
Chain Length:5027
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nanobody 9657
Chain IDs:B, D, H, K
Chain Length:126
Number of Molecules:4
Biological Source:Lama glama
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans iso
Gene (Uniprot):FKBP1B
Chain IDs:E, F, I, L
Chain Length:107
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Primary Citation
Lipids modulate the open probability of RyR1 under cryo-EM conditions.
Structure 33 2029 2040.e3 (2025)
PMID: 41027431 DOI: 10.1016/j.str.2025.09.003

Abstact

Ryanodine receptors (RyRs) are intracellular tetrameric ion channels responsible for Ca(2+) release from the sarcoplasmic and endoplasmic reticulum. Ryanodine receptor 1 (RyR1) isoform, critical for muscle contraction, has been studied most extensively. While cryoelectron microscopy (cryo-EM) has been instrumental in revealing near-atomic details of RyR gating mechanisms, the open probability of RyR1 under cryo-EM conditions is notably lower than that observed in electrophysiological studies. Here, we present a cryo-EM study examining the open probability of RyR1 solubilized in CHAPS with varying lipid concentrations. We found that increasing lipid concentration from 0.001% to 0.05% raised the RyR1 open probability from 16% to 84%, whereas RyR1 reconstituted into lipid nanodiscs remained closed. We modeled 72 lipid molecules in the map reconstructed at the highest lipid concentration. These findings demonstrate the important role of lipids in modulating the open fraction of solubilized RyR1 channels under cryo-EM conditions and suggest optimal lipid mimetics for structural studies of RyR1 gating.

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