9H81 image
Deposition Date 2024-10-28
Release Date 2025-09-03
Last Version Date 2025-09-03
Entry Detail
PDB ID:
9H81
Keywords:
Title:
human carbonic anhydrase I in complex with Sonepiprazole
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.26
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Carbonic anhydrase 1
Gene (Uniprot):CA1
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:261
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural Studies of the Dopamine D 4 Receptor Antagonist Sonepiprazole as an Inhibitor of Human Carbonic Anhydrases.
Acs Med.Chem.Lett. 16 483 486 (2025)
PMID: 40104783 DOI: 10.1021/acsmedchemlett.5c00034

Abstact

In this study, we provide the first evidence that sonepiprazole, a dopamine D4 receptor antagonist, acts as a potent inhibitor of human carbonic anhydrases (hCAs). Sonepiprazole exhibited significant inhibitory activity across the panel of catalytically active hCAs, with the exception of hCA IV, and hCA III. The most potent inhibition was observed against the brain-associated isoform hCA VII, with a K I of 2.9 nM. Insights from X-ray crystallographic structures of the complexes with hCA I, hCA II, and hCA XII revealed that the sulfonamide group of sonepiprazole coordinates the zinc ion in the active site, a typical interaction for this class of inhibitors. Despite the presence of isoform-specific residues at the rim of the active site pocket, these variations seem not to significantly impact the compound overall inhibition potency. These findings highlight a dual functionality of sonepiprazole as both a D4 receptor antagonist and a carbonic anhydrase inhibitor.

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Primary Citation of related structures
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