9H4U image
Deposition Date 2024-10-21
Release Date 2025-08-27
Last Version Date 2025-08-27
Entry Detail
PDB ID:
9H4U
Keywords:
Title:
Deacetylase FI8 utilizes unconventional variant of a catalytic triad: the diluted triad
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.54 Å
R-Value Free:
0.20
R-Value Work:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Carbohydrate esterase FI8
Chain IDs:A, B
Chain Length:640
Number of Molecules:2
Biological Source:Flavimarina sp. HEL_I_48
Primary Citation
Insights into a water-mediated catalytic triad architecture in CE20 carbohydrate esterases.
Nat Commun 16 7034 7034 (2025)
PMID: 40745183 DOI: 10.1038/s41467-025-62387-5

Abstact

Carbohydrate esterases modify polysaccharides by removing different ester moieties thereby affecting their physicochemical properties and their accessibility by glycoside hydrolases. We determined the full-length structures of two members (Fl8CE20_II and PpCE20_II) from the carbohydrate esterase family 20 (CE20) by X-ray crystallography that feature an ancillary domain, inserted into the catalytic SGNH-hydrolase domain. Detailed structural analysis identifies a so far undescribed catalytic triad architecture which lacks the typical aspartate for polarization of the histidine but instead reveals a precisely coordinated water molecule mediating contact between the His and Asp. This coordinated water in the Ser-His-(H2O-Asp/Asn) motif, as further confirmed by mutational studies and by determination of kinetic constants, is crucial for catalytic activity. We therefore term this active site architecture a water-mediated catalytic triad.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback