9GH9 image
Deposition Date 2024-08-15
Release Date 2025-08-27
Last Version Date 2026-03-18
Entry Detail
PDB ID:
9GH9
Keywords:
Title:
A novel aminotransferase from Streptomyces sp.
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.15
R-Value Work:
0.12
Space Group:
P 21 21 2
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aspartate aminotransferase fa
Gene (Uniprot):OIM89_06295
Chain IDs:A, B
Chain Length:465
Number of Molecules:2
Biological Source:Streptomyces sp. BV333
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Primary Citation
Functional and structural insights into a thermostable (S)-selective amine transaminase and its improved substrate scope by protein engineering.
Appl. Microbiol. Biotechnol. 109 180 180 (2025)
PMID: 40796981 DOI: 10.1007/s00253-025-13536-9

Abstact

A (S)-selective amine transaminase from a Streptomyces strain, Sbv333-ATA, is a biocatalyst showing both high thermostability with a melting temperature of 85 degrees C and broad substrate specificity for the amino acceptor. This enzyme was further characterized both biochemically and structurally. The Sbv333-ATA is stable in the presence of up to 20% (v/v) of the water-miscible cosolvents methanol, ethanol, acetonitrile, and dimethyl sulfoxide, and in biphasic systems with petroleum ether, toluene, and ethyl acetate as an organic phase. The enzyme showed also a good activity toward different amino donors, such as (S)-methylbenzylamine and 2-phenylethylamine, aliphatic mono- and di-amines, like propylamine and cadaverine, and selected amino acids. However, more sterically hindered aromatic amines were not accepted. Based on the knowledge of the three-dimensional structures obtained, a rational approach to site specific mutagenesis was carried out to broaden the substrate specificity of Sbv333-ATA. The mutant W89A showed the highest activity toward bulky amines as substrates, such as the diaromatic compound 1,2-diphenylethylamine. The 3D structures of the holo and inhibitor gabaculine bound forms of native Sbv333-ATA, and holo W89A and F61C mutants were determined at high resolutions of 1.49, 1.24, and 1.31 (both mutants) A, respectively. These structures were important for revealing further details of the active site binding pockets of the Sbv333-ATA and its mechanism. KEY POINTS: * Sbv333-ATA is a highly thermostable transaminase with a broad substrate scope. * Sbv333-ATA remains active in various organic cosolvents and biphasic systems. * Mutant W89A expands substrate range to accept bulky diaromatic amines.

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Primary Citation of related structures
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