ISDA: 9EBP

Deposition Date 2024-11-12

Release Date 2025-11-19

Last Version Date 2026-04-15

Entry Detail

PDB ID:

9EBP

Keywords:

RNA

Title:

Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine

Biological Source:

Source Organism(s):

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.28

R-Value Work:

0.24

R-Value Observed:

0.25

Space Group:

P 21 21 2

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Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:RNA (81-MER)
Chain IDs:A, B (auth: M)
Chain Length:81
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

IRI

LUM

Primary Citation

Structural and functional clues challenge the hypothesis that the yjdF riboswitch is natively regulated through broad recognition of azaaromatic compounds.

Spradlin, S.F, Dickerson, K.A, Batey, R.T.Show

Nucleic Acids Res. 53 ? ? (2025)

PMID: 41277687 DOI: 10.1093/nar/gkaf1278

Primary Citation of related structures

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