9CSJ image
Deposition Date 2024-07-24
Release Date 2025-08-13
Last Version Date 2026-02-25
Entry Detail
PDB ID:
9CSJ
Title:
Crystal structure of human glyoxalase domain-containing protein 4 (GLOD4) at 2.33 A resolution.
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.33 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 2 of Glyoxalase domai
Gene (Uniprot):GLOD4
Chain IDs:A, B, C
Chain Length:299
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Selective peroxynitrite-mediated protein nitration catalyzed by glyoxalase domain containing protein 4.
Proc. Natl. Acad. Sci. U.S.A. 123 e2515002123 e2515002123 (2026)
PMID: 41628334 DOI: 10.1073/pnas.2515002123

Abstact

Tyrosine nitration alters the structure, function, and cellular localization of proteins and is implicated in the pathology of multiple diseases [G. Ferrer-Sueta et al., Chem. Rev. 118, 1338-1408 (2018), H. Ischiropoulos, Arch. Biochem. Biophys. 356, 1-11 (1998), I. Griswold-Prenner et al., J. Biol. Chem. 299, 105038-10554 (2023)]. Although protein nitration is assumed to proceed via nonspecific chemical mechanisms, it is highly selective, suggesting the possibility of enzymatic catalysis. Here, we showed that glyoxalase domain-containing protein 4 (GLOD4), a previously uncharacterized protein, is an enzyme that catalyzes selective protein nitration. A primary in vivo target for GLOD4-mediated nitration is alpha-synuclein (alpha-syn), which is central to the pathogenesis of Parkinson's disease (PD) and related disorders. We document tyrosine nitration of alpha-syn by GLOD4 in vitro, in cells, and in a murine model of synuclein pathology. The data identified a function of GLOD4 and other structurally related proteins that catalyze the peroxynitrite-mediated selective protein tyrosine nitration. This enzymatic catalysis of nitration may unearth pathophysiological mechanisms and potential interventions in diseases such as PD, cancer, and autoimmunity.

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Primary Citation of related structures
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