ISDA: 9CK9

Deposition Date 2024-07-08

Release Date 2026-03-18

Last Version Date 2026-03-18

Entry Detail

PDB ID:

9CK9

Keywords:

DNA

Title:

[7F1F-AgR3-int] Tensegrity triangle with 2-thiothymidine modification in the junction region intercalating Ag+ between base pair stacks with R3 symmetry

Biological Source:

Source Organism(s):

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.55 Å

R-Value Free:

0.17

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

H 3

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*GP*CP*AP*GP*
Chain IDs:A
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*CP*AP*GP*AP*CP
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*CP*TP*GP*CP
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*TP*GP*AP*TP*GP
Chain IDs:D
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Thiopyrimidine metal base pairs

Vecchioni, S, Sha, R, Lu, B, Ohayon, Y.P.Show

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Primary Citation of related structures

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