8ZN9 image
Deposition Date 2024-05-26
Release Date 2025-08-27
Last Version Date 2026-03-11
Entry Detail
PDB ID:
8ZN9
Keywords:
Title:
A vast marine sulfonate-based carbon cycle fueled by novel sulfoquinovosidases
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxidoreductase, putative
Gene (Uniprot):RD1_2308
Chain IDs:A, B, C, D, E, F
Chain Length:400
Number of Molecules:6
Biological Source:Roseobacter denitrificans OCh 114
Primary Citation
Cosmopolitan marine bacteria facilitate a vast phytoplankton-derived sulfonate-based carbon flow through sulfoquinovosidases.
Nat Commun 17 209 209 (2025)
PMID: 41350266 DOI: 10.1038/s41467-025-66898-z

Abstact

Sulfoquinovose (SQ) and sulfoquinovosyl glycerol (SQGro) are derived from abundant membrane sulfolipids termed sulfoquinovosyl diacylglycerols (SQDG) and produced by photosynthetic organisms, serving as sources of carbon and sulfur for bacteria. The conversion processes of these sulfoquinovosyl compounds within marine ecosystems, and their quantitative contributions to the marine organic matter pool, are poorly understood. Here, we identify Alteromonas macleodii, a marine bacterium capable of metabolizing SQ and SQGro through a sulfoquinovosidase. This enzyme converts SQGro to SQ and is a member of a clade within glycoside hydrolase family 31, distinct from other sulfoquinovosidases. The ubiquitous presence of sulfoquinovosidases and their transcripts throughout marine environments implicates active metabolism of sulfoquinovose glycosides, particularly in the sunlit surface ocean. We further demonstrate that marine algae produce significant quantities of cellular SQGro, and we estimate the annual turnover of SQGro using field samples from coastal and open ocean environments. Together with SQDG and SQ, these sulfoquinovosyl compounds constitute a substantial portion of the marine organic carbon turnover, estimated at around 1.5 petagrams of carbon per annum. These findings reveal a vast, previously unappreciated pool of organosulfonates within the microbial food web that contributes significantly to the marine carbon and sulfur cycles.

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Primary Citation of related structures
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