8ZDJ image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDJ
Keywords:
Title:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector (gp5, gp9, gp10, gp12 and gp13)
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.74 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Portal Protein (gp5)
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:137
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stopper Protein (gp10)
Chain IDs:M, N, O, P, Q, R
Chain Length:165
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail Tube Protein (gp13)
Chain IDs:S, T, U, V, W, X
Chain Length:299
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adaptor Protein (gp9)
Chain IDs:Y (auth: a), Z (auth: b), AA (auth: c), BA (auth: d), CA (auth: e), DA (auth: f), EA (auth: g), FA (auth: h), GA (auth: i), HA (auth: j), IA (auth: k), JA (auth: l)
Chain Length:137
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Terminator Protein (gp12)
Chain IDs:KA (auth: m), LA (auth: n), MA (auth: o), NA (auth: p), OA (auth: q), PA (auth: r)
Chain Length:165
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
Primary Citation
Cryo-EM and cryo-ET reveal the molecular architecture and host interactions of mycobacteriophage Douge.
Cell Rep 44 116057 116057 (2025)
PMID: 40711877 DOI: 10.1016/j.celrep.2025.116057

Abstact

Recent reports highlight the efficacy of engineered mycobacteriophages to treat non-tuberculosis mycobacterial disease. Molecular insights into mycobacteriophage architecture and host interactions could allow structure-guided phage engineering to increase efficacy and broaden host range, but such information is currently unavailable. We describe the cryoelectron microscopy (cryo-EM) structure of mycobacteriophage Douge, which contains 1,105 protein subunits assembled into a complete siphophage and is coated with glycan-binding domains for mycobacterial cell surface interactions. When filled with viral genome, the channel spanning the connector, tail, and baseplate is sealed by tape measure proteins, providing a genome gating system and requiring limited structural changes for genome ejection upon phage-host contact. Nanometer-resolution cryoelectron tomography (cryo-ET) snapshots of phage-host interactions show that the baseplate remains attached to the mycobacterial outer membrane during viral genome ejection. This study reveals high-resolution structural details of this mycobacteriophage and its interaction with host glycans.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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