8ZDI image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDI
Keywords:
Title:
Cryo-EM structure of Mycobacteriophage Douge genome-free capsid (gp8)
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.58 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major Capsid Protein (gp8)
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:382
Number of Molecules:9
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
Primary Citation
Cryo-EM and cryo-ET reveal the molecular architecture and host interactions of mycobacteriophage Douge.
Cell Rep 44 116057 116057 (2025)
PMID: 40711877 DOI: 10.1016/j.celrep.2025.116057

Abstact

Recent reports highlight the efficacy of engineered mycobacteriophages to treat non-tuberculosis mycobacterial disease. Molecular insights into mycobacteriophage architecture and host interactions could allow structure-guided phage engineering to increase efficacy and broaden host range, but such information is currently unavailable. We describe the cryoelectron microscopy (cryo-EM) structure of mycobacteriophage Douge, which contains 1,105 protein subunits assembled into a complete siphophage and is coated with glycan-binding domains for mycobacterial cell surface interactions. When filled with viral genome, the channel spanning the connector, tail, and baseplate is sealed by tape measure proteins, providing a genome gating system and requiring limited structural changes for genome ejection upon phage-host contact. Nanometer-resolution cryoelectron tomography (cryo-ET) snapshots of phage-host interactions show that the baseplate remains attached to the mycobacterial outer membrane during viral genome ejection. This study reveals high-resolution structural details of this mycobacteriophage and its interaction with host glycans.

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Protein

Chemical

Disease

Primary Citation of related structures
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