8YHN image
Deposition Date 2024-02-28
Release Date 2025-03-05
Last Version Date 2026-03-25
Entry Detail
PDB ID:
8YHN
Keywords:
Title:
Crystal structure of Cytochrome P450 107P2 from streptomyces avermitilis
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.27
R-Value Work:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome P450
Chain IDs:A
Chain Length:411
Number of Molecules:1
Biological Source:Streptomyces avermitilis
Primary Citation
Structural Insights into the Interaction of Terpenoids with Streptomyces avermitilis CYP107P2.
Biomol Ther (Seoul) 32 474 480 (2024)
PMID: 38835149 DOI: 10.4062/biomolther.2024.045

Abstact

Streptomyces avermitilis genome includes 33 genes encoding monooxygenation-catalyzing cytochrome P450 enzymes. We investigated the structure of CYP107P2 and its interactions with terpenoid compounds. The recombinant CYP107P2 protein was expressed in Escherichia coli and the purified enzyme exhibited a typical P450 spectrum upon CO-binding in its reduced state. Type-I substrate-binding spectral titrations were observed with various terpenoid compounds, including alpha-pinene, beta-pinene, alpha-terpinyl acetate, and (+)-3-carene. The calculated binding affinities (K(d)) ranged from 15.9 to 50.8 muM. The X-ray crystal structure of CYP107P2 was determined at 1.99 A resolution, with a well-conserved overall P450 folding conformation. The terpenoid compound docking models illustrated that the structural interaction between monoterpenes and CYP107P2, with the distance between heme and terpenes ranging from 3.4 to 5.4 A, indicates potential substrate binding for P450 enzyme. This study suggests that CYP107P2 is a Streptomyces P450 enzyme capable of catalyzing terpenes as substrates, signifying noteworthy advancements in comprehending a novel P450 enzyme's involvement in terpene reactions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback