8VMK image
Deposition Date 2024-01-13
Release Date 2025-08-27
Last Version Date 2026-03-25
Entry Detail
PDB ID:
8VMK
Title:
A crystal structure of heme-dependent tyrosine hydroxylase complexed with a substrate analog, 3-(4-hydroxyphenyl)propionic acid
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.56 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heme-dependent L-tyrosine hyd
Chain IDs:A, B
Chain Length:316
Number of Molecules:2
Biological Source:Streptomyces sclerotialus
Primary Citation
Substrate Analogs Implicate a Free Radical Pathway in Tyrosine Hydroxylase Catalysis.
Acs Catalysis 15 18270 18281 (2025)
PMID: 41737883 DOI: 10.1021/acscatal.5c05776

Abstact

Heme-dependent tyrosine hydroxylases (TyrH) are critical enzymes in catecholamine biosynthesis, yet the role of the substrate's alpha-amino group in their monooxygenation mechanism has been unclear. Using 3-(4-hydroxyphenyl)propionic acid (HPPA), an l-tyrosine analog lacking the alpha-amino group, we observed a distinct dimerization pathway that competes with the expected hydroxylation reaction. Several lines of evidence confirm that this process originates from a radical intermediate. First, the formation of this (HPPA)(2) dimer is selectively inhibited by a free radical scavenger. Second, (18)O-labeling experiments show phenolic oxygen scrambling, indicating a disruption of substrate aromaticity during catalysis. Finally, EPR spectroscopy using nitrosobenzene as a substrate analog revealed a substrate-based free radical. This mechanistic divergence clarifies the role of the alpha-amino group. Its absence in HPPA creates a kinetic bottleneck for the final O atom transfer step, allowing a fraction of the substrate radical to form the off-pathway dimer. Thus, the native substrate's alpha-amino group acts as a crucial kinetic modulator, ensuring the rapid and efficient commitment of the substrate radical to productive hydroxylation. These results collectively establish a peroxidase-like free radical pathway for TyrH and reveal the nonessential yet significant role the amino group plays in controlling reaction outcomes.

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Primary Citation of related structures
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