ISDA: 8SKZ

Deposition Date 2023-04-20

Release Date 2024-11-20

Last Version Date 2024-11-20

Entry Detail

PDB ID:

8SKZ

Keywords:

TRANSLOCASE

Title:

Cryo-EM structure of DDM1-HELLS chimera bound to the nucleosome

Biological Source:

Source Organism(s):

Arabidopsis thaliana (Taxon ID: 3702)
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATP-dependent DNA helicase DD
Gene (Uniprot):HELLS, DDM1
Chain IDs:A
Chain Length:821
Number of Molecules:1
Biological Source:Arabidopsis thaliana, Homo sapiens

UniProt ID:Q9XFH4,Q9NRZ9 Pfam ID:PF00176, PF00271

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:B, E
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P84233 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:C, G
Chain Length:133
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P06897 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:D, H
Chain Length:123
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P02281 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):LOC121398084
Chain IDs:F, I
Chain Length:110
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:A0A8J1LTD2 Pfam ID:PF15511

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (192-MER)
Chain IDs:J
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (192-MER)
Chain IDs:K
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules