8R89 image
Deposition Date 2023-11-28
Release Date 2024-12-11
Last Version Date 2026-06-24
Entry Detail
PDB ID:
8R89
Keywords:
Title:
Structure of peptide CpRE12 bound to DPC micelle
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Conformers Calculated:
300
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SER-TYR-GLN-TRP-GLN-ILE-PHE-T
Chain IDs:A
Chain Length:18
Number of Molecules:1
Biological Source:Rhopilema esculentum
Ligand Molecules
Primary Citation
TriplEP-CPP: Algorithm for Predicting the Properties of Peptide Sequences.
Int J Mol Sci 25 ? ? (2024)
PMID: 38999985 DOI: 10.3390/ijms25136869

Abstact

Advancements in medicine and pharmacology have led to the development of systems that deliver biologically active molecules inside cells, increasing drug concentrations at target sites. This improves effectiveness and duration of action and reduces side effects on healthy tissues. Cell-penetrating peptides (CPPs) show promise in this area. While traditional medicinal chemistry methods have been used to develop CPPs, machine learning techniques can speed up and reduce costs in the search for new peptides. A predictive algorithm based on machine learning models was created to identify novel CPP sequences using molecular descriptors using a combination of algorithms like k-nearest neighbors, gradient boosting, and random forest. Some potential CPPs were found and tested for cytotoxicity and penetrating ability. A new low-toxicity CPP was discovered from the Rhopilema esculentum venom proteome through this study.

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Chemical

Disease

Primary Citation of related structures
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