8R1R image
Deposition Date 2023-11-02
Release Date 2024-11-13
Last Version Date 2026-06-17
Entry Detail
PDB ID:
8R1R
Keywords:
Title:
Structure of the Diels Alderase TedJ, in complex with cofactor FAD
Biological Source:
Source Organism(s):
Streptomyces (Taxon ID: 1883)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.59 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Short-chain dehydrogenase/red
Gene (Uniprot):tedJ
Chain IDs:A
Chain Length:510
Number of Molecules:1
Biological Source:Streptomyces
Ligand Molecules
Primary Citation
Chemoenzymatic total synthesis of the antibiotic (-)-13-deoxytetrodecamycin using the Diels-Alderase TedJ.
Chem Sci 16 16993 16999 (2025)
PMID: 40880792 DOI: 10.1039/d5sc05480j

Abstact

The tetrodecamycins are tetracyclic natural products that exhibit potent antimicrobial activity against a multitude of drug-resistant pathogens. These compounds are structurally distinguished by the presence of a tetronate ring and trans-decalin with six contiguous asymmetric centres united by a seven-membered oxygen heterocycle. Herein we describe the first total synthesis of the antibiotic (-)-13-deoxytetrodecamycin. Our strategy is predicated on an enantioselective [4 + 2]-cycloaddition catalysed by the FAD-dependent Diels-Alderase TedJ, forming the trans-decalin with concomitant creation of two rings and four contiguous stereocenters with exquisite selectivity under mild conditions. In complementary studies, in vitro enzyme assays, X-ray crystallography and computational modelling are used to provide molecular insights into the TedJ catalysed reaction. These studies illustrate the power of adopting a chemoenzymatic approach for the enantioselective synthesis of a target compound which would be difficult to achieve using non-biological methods and provide a practical demonstration of the use of Diels-Alder biocatalysts in total synthesis. This approach has potentially widespread value in the global challenge of discovery and development of new antibiotics.

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