8J9J image
Deposition Date 2023-05-03
Release Date 2024-02-28
Last Version Date 2026-08-12
Entry Detail
PDB ID:
8J9J
Title:
Cryo-EM structure of Euglena gracilis complex I, NADH state
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.03 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NDUFS1A
Chain IDs:A (auth: 1A)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS1B
Chain IDs:B (auth: 1B)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND2B
Chain IDs:C (auth: 2B)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND4L
Chain IDs:D (auth: 4L)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA1
Chain IDs:E (auth: A1)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA2
Chain IDs:F (auth: A2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA3
Chain IDs:G (auth: A3)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA5
Chain IDs:H (auth: A5)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA6
Chain IDs:I (auth: A6)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA7
Chain IDs:J (auth: A7)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA8
Chain IDs:K (auth: A8)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA9
Chain IDs:L (auth: A9)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFAB1-alpha
Chain IDs:M (auth: AB)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFAB1-beta
Chain IDs:N (auth: AC)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA12
Chain IDs:O (auth: AL)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA13
Chain IDs:P (auth: AM)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFA11
Chain IDs:Q (auth: AN)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB2
Chain IDs:R (auth: B2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB3
Chain IDs:S (auth: B3)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB4
Chain IDs:T (auth: B4)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB5
Chain IDs:U (auth: B5)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB6
Chain IDs:V (auth: B6)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB7
Chain IDs:W (auth: B7)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB8
Chain IDs:X (auth: B8)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB9
Chain IDs:Y (auth: B9)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB10
Chain IDs:Z (auth: BL)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFB11
Chain IDs:AA (auth: BM)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFC2
Chain IDs:BA (auth: C4)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG1
Chain IDs:CA (auth: E1)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG2
Chain IDs:DA (auth: E2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG3
Chain IDs:EA (auth: E3)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG4
Chain IDs:FA (auth: E4)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG5
Chain IDs:GA (auth: E5)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG6
Chain IDs:HA (auth: E6)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG7
Chain IDs:IB (auth: E7)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG8
Chain IDs:IA (auth: E8)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG10
Chain IDs:JA (auth: EA)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG11
Chain IDs:KA (auth: EB)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG12
Chain IDs:LA (auth: EC)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUEG13
Chain IDs:MA (auth: ED)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFX
Chain IDs:NA (auth: FX)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUCA1
Chain IDs:OA (auth: G1)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUCA2
Chain IDs:PA (auth: G2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUCA3
Chain IDs:QA (auth: G3)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND1
Chain IDs:RA (auth: N1)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND2A
Chain IDs:SA (auth: N2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND3
Chain IDs:TA (auth: N3), WA (auth: N6)
Chain Length:0
Number of Molecules:2
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductas
Gene (Uniprot):nad4
Chain IDs:UA (auth: N4)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:ND5
Chain IDs:VA (auth: N5)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS2
Chain IDs:XA (auth: S2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS3
Chain IDs:YA (auth: S3)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS4
Chain IDs:ZA (auth: S4)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS5
Chain IDs:AB (auth: S5)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS6
Chain IDs:BB (auth: S6)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS7
Chain IDs:CB (auth: S7)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFS8
Chain IDs:DB (auth: S8)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:UNK-UNK-UNK-UNK-UNK-UNK-UNK-U
Chain IDs:EB (auth: U1), FB (auth: U2)
Chain Length:0
Number of Molecules:2
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFV1
Chain IDs:GB (auth: V1)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Polymer Type:polypeptide(L)
Molecule:NDUFV2
Chain IDs:HB (auth: V2)
Chain Length:0
Number of Molecules:1
Biological Source:Euglena gracilis
Primary Citation
Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun 15 1628 1628 (2024)
PMID: 38388527 DOI: 10.1038/s41467-024-46018-z

Abstact

Euglena gracilis, a model organism of the eukaryotic supergroup Discoba harbouring also clinically important parasitic species, possesses diverse metabolic strategies and an atypical electron transport chain. While structures of the electron transport chain complexes and supercomplexes of most other eukaryotic clades have been reported, no similar structure is currently available for Discoba, limiting the understandings of its core metabolism and leaving a gap in the evolutionary tree of eukaryotic bioenergetics. Here, we report high-resolution cryo-EM structures of Euglena's respirasome I + III2 + IV and supercomplex III2 + IV2. A previously unreported fatty acid synthesis domain locates on the tip of complex I's peripheral arm, providing a clear picture of its atypical subunit composition identified previously. Individual complexes are re-arranged in the respirasome to adapt to the non-uniform membrane curvature of the discoidal cristae. Furthermore, Euglena's conformationally rigid complex I is deactivated by restricting ubiquinone's access to its substrate tunnel. Our findings provide structural insights for therapeutic developments against euglenozoan parasite infections.

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Protein

Chemical

Disease

Primary Citation of related structures
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