8B8I image
Deposition Date 2022-10-04
Release Date 2024-04-17
Last Version Date 2026-06-10
Entry Detail
PDB ID:
8B8I
Title:
Nanobody (NbLumSyt1) bound to human Syt1
Biological Source:
Source Organism(s):
Vicugna pacos (Taxon ID: 30538)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.29
R-Value Work:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nanobody (NbLumSyt1)
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:118
Number of Molecules:8
Biological Source:Vicugna pacos
Polymer Type:polypeptide(L)
Molecule:Synaptotagmin-1
Gene (Uniprot):SYT1
Chain IDs:I, J, K, L, M, N, O, P
Chain Length:60
Number of Molecules:8
Biological Source:Homo sapiens
Primary Citation

Abstact

Synaptic neurotransmission is a critical hallmark of brain activity and one of the first processes affected in neural diseases. Monitoring this process, particularly synaptic vesicle recycling, in living cells has been instrumental in revealing the mechanisms responsible for neurotransmitter release. However, currently available reporters suffer from limitations, such as large probe sizes or limited compatibility for human neurons, hampering the quantitative analysis of synaptic pathophysiology. Here, we describe the NbLumSyt1 toolkit, a panel of nanobody-based affinity probes that target the luminal domain of the synaptic vesicle protein Synaptotagmin 1 (Syt1). These new tools enable quantitative, noninvasive imaging and functional interrogation of Syt1 exo-endocytosis and trafficking in human neurons, with unprecedented precision, versatility and cost efficiency, in technologies ranging from fixed- and live-cell super-resolution imaging to electron microscopy and mass spectrometry. Overall, NbLumSyt1 nanobinders provide a valuable platform for studying synaptic physiology and pathophysiology, benefiting fundamental neuroscience and translational efforts to study and develop treatments for brain-related disorders.

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Primary Citation of related structures
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