6W8S image
Deposition Date 2020-03-21
Release Date 2020-05-20
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6W8S
Title:
Crystal structure of metacaspase 4 from Arabidopsis
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.48 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metacaspase-4
Gene (Uniprot):AMC4
Chain IDs:A, B, C, D
Chain Length:426
Number of Molecules:4
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Structural basis for Ca2+-dependent activation of a plant metacaspase.
Nat Commun 11 2249 2249 (2020)
PMID: 32382010 DOI: 10.1038/s41467-020-15830-8

Abstact

Plant metacaspases mediate programmed cell death in development, biotic and abiotic stresses, damage-induced immune response, and resistance to pathogen attack. Most metacaspases require Ca2+ for their activation and substrate processing. However, the Ca2+-dependent activation mechanism remains elusive. Here we report the crystal structures of Metacaspase 4 from Arabidopsis thaliana (AtMC4) that modulates Ca2+-dependent, damage-induced plant immune defense. The AtMC4 structure exhibits an inhibitory conformation in which a large linker domain blocks activation and substrate access. In addition, the side chain of Lys225 in the linker domain blocks the active site by sitting directly between two catalytic residues. We show that the activation of AtMC4 and cleavage of its physiological substrate involve multiple cleavages in the linker domain upon activation by Ca2+. Our analysis provides insight into the Ca2+-dependent activation of AtMC4 and lays the basis for tuning its activity in response to stresses for engineering of more sustainable crops for food and biofuels.

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Protein

Chemical

Disease

Primary Citation of related structures
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