6T2K image
Deposition Date 2019-10-08
Release Date 2020-01-01
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6T2K
Keywords:
Title:
Furano[2,3-d]prymidine amides as Notum inhibitors
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.38 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Palmitoleoyl-protein carboxyl
Gene (Uniprot):NOTUM
Chain IDs:A
Chain Length:383
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Scaffold-hopping identifies furano[2,3-d]pyrimidine amides as potent Notum inhibitors.
Bioorg. Med. Chem. Lett. 30 126751 126751 (2020)
PMID: 31862412 DOI: 10.1016/j.bmcl.2019.126751

Abstact

The carboxylesterase Notum is a key negative regulator of the Wnt signaling pathway by mediating the depalmitoleoylation of Wnt proteins. Our objective was to discover potent small molecule inhibitors of Notum suitable for exploring the regulation of Wnt signaling in the central nervous system. Scaffold-hopping from thienopyrimidine acids 1 and 2, supported by X-ray structure determination, identified 3-methylimidazolin-4-one amides 20-24 as potent inhibitors of Notum with activity across three orthogonal assay formats (biochemical, extra-cellular, occupancy). A preferred example 24 demonstrated good stability in mouse microsomes and plasma, and cell permeability in the MDCK-MDR1 assay albeit with modest P-gp mediated efflux. Pharmacokinetic studies with 24 were performed in vivo in mouse with single oral administration of 24 showing good plasma exposure and reasonable CNS penetration. We propose that 24 is a new chemical tool suitable for cellular studies to explore the fundamental biology of Notum.

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Primary Citation of related structures
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