ISDA: 6PB4

Deposition Date 2019-06-13

Release Date 2020-03-18

Last Version Date 2024-03-20

Entry Detail

PDB ID:

6PB4

Keywords:

TRANSCRIPTION/DNA/RNA

Title:

The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2

Biological Source:

Source Organism(s):

Escherichia coli (Taxon ID: 562)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.35 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:SYNTHETIC NONTEMPLATE STRAND
Chain IDs:I (auth: 1)
Chain Length:78
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:SYNTHETIC TEMPLATE STRAND DNA
Chain IDs:J (auth: 2)
Chain Length:78
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polyribonucleotide
Molecule:Nascent RNA
Chain IDs:K (auth: 3)
Chain Length:3
Number of Molecules:1
Biological Source:Escherichia coli

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Chain IDs:A, B
Chain Length:329
Number of Molecules:2
Biological Source:Escherichia coli

UniProt ID:P0A7Z4 Pfam ID:PF01000, PF01193, PF03118 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Chain IDs:C
Chain Length:1342
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A8V2 Pfam ID:PF04563, PF04561, PF04565, PF10385, PF00562, PF04560 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Chain IDs:D
Chain Length:1407
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A8T7 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Chain IDs:E
Chain Length:91
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A800 Pfam ID:PF01192 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA polymerase sigma factor R
Gene (Uniprot):rpoD
Chain IDs:F
Chain Length:628
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P00579 Pfam ID:PF03979, PF00140, PF04546, PF04542, PF04539, PF04545

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:cAMP-activated global transcr
Chain IDs:G, H
Chain Length:210
Number of Molecules:2
Biological Source:Escherichia coli

UniProt ID:P0ACJ8 Pfam ID:PF00027, PF13545

Ligand Molecules