6DZL image
Deposition Date 2018-07-05
Release Date 2018-09-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6DZL
Keywords:
Title:
Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Biological Source:
Source Organism(s):
Zaire ebolavirus (Taxon ID: 128951)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
4.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ebola virus Makona GP1
Chain IDs:A, E (auth: B), I (auth: C)
Chain Length:321
Number of Molecules:3
Biological Source:Zaire ebolavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ebola virus Makona GP2
Gene (Uniprot):GP
Chain IDs:B (auth: D), F (auth: E), J (auth: F)
Chain Length:166
Number of Molecules:3
Biological Source:Zaire ebolavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fv domain of ADI-15878 Fab he
Chain IDs:D (auth: G), H, L (auth: I)
Chain Length:121
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fv domain of ADI-15878 Fab li
Chain IDs:C (auth: J), G (auth: K), K (auth: L)
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Basis of Pan-Ebolavirus Neutralization by an Antibody Targeting the Glycoprotein Fusion Loop.
Cell Rep 24 2723 2732.e4 (2018)
PMID: 30184505 DOI: 10.1016/j.celrep.2018.08.009

Abstact

Monoclonal antibodies (mAbs) with pan-ebolavirus cross-reactivity are highly desirable, but development of such mAbs is limited by a lack of a molecular understanding of cross-reactive epitopes. The antibody ADI-15878 was previously identified from a human survivor of Ebola virus Makona variant (EBOV/Mak) infection. This mAb demonstrated potent neutralizing activity against all known ebolaviruses and provided protection in rodent and ferret models against three ebolavirus species. Here, we describe the unliganded crystal structure of ADI-15878 as well as the cryo-EM structures of ADI-15878 in complex with the EBOV/Mak and Bundibugyo virus (BDBV) glycoproteins (GPs). ADI-15878 binds through an induced-fit mechanism by targeting highly conserved residues in the internal fusion loop (IFL), bridging across GP protomers via the heptad repeat 1 (HR1) region. Our structures provide a more complete description of the ebolavirus immunogenic landscape, as well as a molecular basis for how rare but potent antibodies target conserved filoviral fusion machinery.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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