5ZVB image
Deposition Date 2018-05-09
Release Date 2018-11-21
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5ZVB
Keywords:
STRUCTURAL PROTEIN/DNA
Title:
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
DNA-binding vector pODB80 (Taxon ID: 62978)
Expression System(s):
Prokaryotic environmental samples
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
5ZVB validation report missing
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:APEBEC3F/ssDNA-T9
Gene (Uniprot):APOBEC3F, APOBEC3G
Chain IDs:A, B
Chain Length:209
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9HC16,Q8IUX4 Pfam ID:PF08210 EC:3.5.4.38
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*TP*TP*TP*TP*CP*
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:DNA-binding vector pODB80
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
CAC
ZN
Primary Citation
Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin. J. Chem. 36 1241 1248 (2018)
DOI: 10.1002/cjoc.201800508
Primary Citation of related structures
5ZVB
Feedback Form
Name
Email
Institute
Feedback