5YXC image
Deposition Date 2017-12-04
Release Date 2017-12-20
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5YXC
Title:
Crystal structure of Zinc binding protein ZinT in complex with citrate from E. coli
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.76 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metal-binding protein ZinT
Gene (Uniprot):zinT
Chain IDs:A, B
Chain Length:216
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Crystal structure of E. coli ZinT with one zinc-binding mode and complexed with citrate
Biochem. Biophys. Res. Commun. 500 139 144 (2018)
PMID: 29596824 DOI: 10.1016/j.bbrc.2018.03.192

Abstact

The ZnuABC ATP-binding cassette transporter found in gram-negative bacteria has been implicated in ensuring adequate zinc import into Zn(II)-poor environments. ZinT is an essential component of ZnuABC and contributes to metal transport by transferring metals to ZnuA, which delivers them to ZnuB in periplasmic zinc recruitment. Although several structures of E. coli ZinT have been reported, its zinc-binding sites and oligomeric state have not been clearly identified. Here, we report the crystal structure of E. coli ZinT at 1.76 Å resolution. This structure contains one zinc ion in its calycin-like domain, and this ion is coordinated by three highly conserved histidine residues (His167, His176 and His178). Moreover, three oxygen atoms (O1, O6 and O7) from the citrate molecule interact with zinc, giving the zinc ion stable octahedral coordination. Our EcZinT structure shows the fewest zinc ions bound of all reported EcZinT structures. Crystallographic packing and size exclusion chromatography suggest that EcZinT prefers to form monomers in solution. Our results provide insights into the molecular function of ZinT.

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