5KWY image
Deposition Date 2016-07-19
Release Date 2016-08-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5KWY
Title:
Structure of human NPC1 middle lumenal domain bound to NPC2
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Niemann-Pick C1 protein
Gene (Uniprot):NPC1
Chain IDs:A, B
Chain Length:247
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Epididymal secretory protein
Gene (Uniprot):NPC2
Chain IDs:C, D
Chain Length:133
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Clues to the mechanism of cholesterol transfer from the structure of NPC1 middle lumenal domain bound to NPC2.
Proc. Natl. Acad. Sci. U.S.A. 113 10079 10084 (2016)
PMID: 27551080 DOI: 10.1073/pnas.1611956113

Abstact

Export of LDL-derived cholesterol from lysosomes requires the cooperation of the integral membrane protein Niemann-Pick C1 (NPC1) and a soluble protein, Niemann-Pick C2 (NPC2). Mutations in the genes encoding these proteins lead to Niemann-Pick disease type C (NPC). NPC2 binds to NPC1's second (middle), lumenally oriented domain (MLD) and transfers cholesterol to NPC1's N-terminal domain (NTD). Here, we report the 2.4-Å resolution crystal structure of a complex of human NPC1-MLD and NPC2 bearing bound cholesterol-3-O-sulfate. NPC1-MLD uses two protruding loops to bind NPC2, analogous to its interaction with the primed Ebola virus glycoprotein. Docking of the NPC1-NPC2 complex onto the full-length NPC1 structure reveals a direct cholesterol transfer tunnel between NPC2 and NTD cholesterol binding pockets, supporting the "hydrophobic hand-off" cholesterol transfer model.

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Disease

Primary Citation of related structures
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