ISDA: 39AC

Deposition Date 2026-09-25

Release Date 2026-10-07

Last Version Date 2026-10-07

Entry Detail

PDB ID:

39AC

Keywords:

TRANSFERASE

Title:

Crystal structure of a Nucleoside diphosphate kinase from Treponema pallidum (ADP complex)

Biological Source:

Source Organism(s):

Treponema pallidum subsp. pallidum str. Nichols (Taxon ID: 243276)

Expression System(s):

Escherichia coli bl21(de3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.49 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.21

Space Group:

P 1

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Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nucleoside diphosphate kinase
Gene (Uniprot):ndk
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA (auth: a), BA (auth: b), CA (auth: c), DA (auth: d), EA (auth: e), FA (auth: f), GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j)
Chain Length:157
Number of Molecules:36
Biological Source:Treponema pallidum subsp. pallidum str. Nichols

UniProt ID:O83974 Pfam ID:PF00334 EC:2.7.4.6

Ligand Molecules