2PKV image
Deposition Date 2007-04-18
Release Date 2007-07-24
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2PKV
Keywords:
Title:
D-(GGTATACC) ambient pressure
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 61
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*GP*GP*TP*AP*TP*AP*CP*C)
Chain IDs:A, B
Chain Length:8
Number of Molecules:2
Biological Source:
Primary Citation
Adaptation of the base-paired double-helix molecular architecture to extreme pressure.
Nucleic Acids Res. 35 4800 4808 (2007)
PMID: 17617642 DOI: 10.1093/nar/gkm511

Abstact

The behaviour of the d(GGTATACC) oligonucleotide has been investigated by X-ray crystallography at 295 K in the range from ambient pressure to 2 GPa (approximately 20,000 atm). Four 3D-structures of the A-DNA form (at ambient pressure, 0.55, 1.09 and 1.39 GPa) were refined at 1.60 or 1.65 A resolution. In addition to the diffraction pattern of the A-form, the broad meridional streaks previously explained by occluded B-DNA octamers within the channels of the crystalline A-form matrix were observed up to at least 2 GPa. This work highlights an important property of nucleic acids, their capability to withstand very high pressures, while keeping in such conditions a nearly invariant geometry of base pairs that store and carry genetic information. The double-helix base-paired architecture behaves as a molecular spring, which makes it especially adapted to very harsh conditions. These features may have contributed to the emergence of a RNA World at prebiotic stage.

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Primary Citation of related structures
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