2APO image
Deposition Date 2005-08-16
Release Date 2005-11-15
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2APO
Title:
Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable tRNA pseudouridine s
Gene (Uniprot):truB
Chain IDs:A
Chain Length:357
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosome biogenesis protein N
Gene (Uniprot):nop10
Chain IDs:B
Chain Length:60
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE B MET SELENOMETHIONINE
Primary Citation
The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.
Nat. Struct. Mol. Biol. 12 1101 1107 (2005)
PMID: 16286935 DOI: 10.1038/nsmb1036

Abstact

Box H/ACA ribonucleoprotein particles (RNPs) catalyze RNA pseudouridylation and direct processing of ribosomal RNA, and are essential architectural components of vertebrate telomerases. H/ACA RNPs comprise four proteins and a multihelical RNA. Two proteins, Cbf5 and Nop10, suffice for basal enzymatic activity in an archaeal in vitro system. We now report their cocrystal structure at 1.95-A resolution. We find that archaeal Cbf5 can assemble with yeast Nop10 and with human telomerase RNA, consistent with the high sequence identity of the RNP components between archaea and eukarya. Thus, the Cbf5-Nop10 architecture is phylogenetically conserved. The structure shows how Nop10 buttresses the active site of Cbf5, and it reveals two basic troughs that bidirectionally extend the active site cleft. Mutagenesis results implicate an adjacent basic patch in RNA binding. This tripartite RNA-binding surface may function as a molecular bracket that organizes the multihelical H/ACA and telomerase RNAs.

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Primary Citation of related structures
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