29KI image
Deposition Date 2026-03-17
Release Date 2026-05-13
Last Version Date 2026-07-01
Entry Detail
PDB ID:
29KI
Title:
Spinach Ferredoxin I, Reduced, -400 mV
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.11 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferredoxin-1, chloroplastic
Gene (Uniprot):PETF
Chain IDs:A
Chain Length:105
Number of Molecules:1
Biological Source:Spinacia oleracea
Ligand Molecules
Primary Citation
Crystallise, poise, capture: a multimodal platform for correlated structural and spectroscopic characterisation of redox enzymes.
J.Biol.Inorg.Chem. 31 153 162 (2026)
PMID: 42082801 DOI: 10.1007/s00775-026-02148-x

Abstact

Iron-sulfur (Fe-S) clusters are ubiquitous as redox-active protein cofactors, but it is often difficult to collect protein structures in which redox centres are in uniform and well-defined oxidation states. Using spinach ferredoxin I (Fdx) as a model redox protein, we demonstrate an integrated methodological pathway for electrochemical modulation of redox state in protein crystals coupled with in crystallo EPR and online-UV-visible spectroscopy to verify oxidation state. We show that Fdx crystals can be electrochemically reduced, reversibly, without compromising lattice integrity or X-ray diffraction quality. We show that redox levels can be precisely ascertained in crystallo via EPR and UV-visible spectroscopy, enabling a direct correlation between protein structure and electronic state of the metal cluster. In this way, we generate and compare 'oxidised', 'reduced' and 're-oxidised' structures of Fdx. Overall, our approach demonstrates a pipeline which will be applicable to structure-function studies of a wide range of electron-transfer proteins and redox enzymes.

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Primary Citation of related structures
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