28YE image
Deposition Date 2026-02-27
Release Date 2026-06-03
Last Version Date 2026-06-03
Entry Detail
PDB ID:
28YE
Keywords:
RIBOSOME
Title:
50S ribosomal subunit with E-tRNA and RsfS from the alphaproteobacteria Asaia platycodi
Biological Source:
Source Organism(s):
Asaia platycodi JCM 25414 (Taxon ID: 1236525)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
28YE validation report missing
Macromolecular Entities
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:B (auth: A)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:C (auth: B)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:D (auth: C)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:E (auth: D)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:F (auth: E)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:G (auth: F)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosome silencing factor S
Chain IDs:DA (auth: G)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:H
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:I
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:J
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:K
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:L
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:M
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:N
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:O
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:P
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Q
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:CA (auth: R)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:R (auth: S)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:S (auth: T)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:T (auth: U)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:U (auth: V)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:V (auth: W)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:W (auth: X)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:X (auth: Y)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:A (auth: Z)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Y (auth: a)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Z (auth: b)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Polymer Type:polyribonucleotide
Molecule:E-site tRNA (heterogeneous fr
Chain IDs:AA (auth: c)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Polymer Type:polyribonucleotide
Molecule:5S rRNA (fragment)
Chain IDs:BA (auth: d)
Chain Length:0
Number of Molecules:1
Biological Source:Asaia platycodi JCM 25414
Ligand Molecules
NA
Primary Citation
The Evolutionary Lifecycle of Ribosome Hibernation Factors
BioRXiv ? ? ? (2025)
DOI: 10.1101/2025.11.04.686544v2.full
Primary Citation of related structures
28YE
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