24KR image
Deposition Date 2026-03-08
Release Date 2026-06-10
Last Version Date 2026-06-10
Entry Detail
PDB ID:
24KR
Title:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:567
Number of Molecules:3
Biological Source:Influenza A virus (A/California/04/2009(H1N1))
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heavy chain antibody G2.3-Fc
Chain IDs:B (auth: D), D (auth: E), F
Chain Length:400
Number of Molecules:3
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural basis of influenza A virus neutralization by broadly reactive single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem domain.
Int.J.Biol.Macromol. ? 152701 152701 (2026)
PMID: 42190777 DOI: 10.1016/j.ijbiomac.2026.152701

Abstact

Influenza remains one of the most common and contagious respiratory infections causing around a billion cases of seasonal illness annually and five million cases of severe consequences. A recently reported G2.3 antibody exhibited a potent cross-subtype activity against Group 1 influenza A viruses. Here, we shed light on the structural basis of the broad neutralizing activity of G2.3 by using cryoEM. Structural analysis of the G2.3 complex with H1 hemagglutinin revealed a partly conserved epitope located on the stem domain. The structural data were confirmed by the assessment of binding and neutralizing properties of the Fc-modified form of G2.3 with a broad panel of recombinant hemagglutinins and influenza A viruses. We demonstrated remarkably high activity of G2.3-Fc against H1N1 viral strains, which is consistent with G2.3 epitope being the most conserved within the H1 subtype, but low activity towards Group 2 of HA, which was explained by the analysis of the epitope. To suggest the mechanism of G2.3 neutralization, we compared its epitope with those of other broadly neutralizing antibodies that attack the stem domain. Finally, we obtained an escape mutant that has two mutations within the epitope and around, unseen in circulating H1 strains, allowing this mutant to elude from G2.3 and made assumption of the mechanism of such evasion.

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Primary Citation of related structures
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