23LP image
Deposition Date 2026-02-10
Release Date 2026-07-01
Last Version Date 2026-07-15
Entry Detail
PDB ID:
23LP
Keywords:
Title:
Two of a kind: composition, structure, and photophysics of two DNA-AgNCs stabilized by the same DNA-sequence
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*GP*GP*AP*CP*GP*
Chain IDs:A, B, C (auth: D), D (auth: E), E (auth: G), F (auth: H), G (auth: J), H (auth: L)
Chain Length:10
Number of Molecules:8
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Two of a Kind: Composition and Photophysics of Two Silver Nanoclusters Stabilized by the Same DNA Sequence.
J.Am.Chem.Soc. 148 25989 25995 (2026)
PMID: 42313503 DOI: 10.1021/jacs.6c04812

Abstact

Sequence-structure relationships in DNA-stabilized silver nanoclusters (DNA-AgNCs) remain a central challenge in predicting their optical properties. Here, we show that a single guanine-rich DNA scaffold can direct the formation of two distinct silver nanoclusters within the same reaction mixture. While the clusters' composition and charge are very similar, their photophysical properties are surprisingly different. We present, for the first time, detailed structural insights into one of the two DNA-AgNCs: the near-infrared emitting silver nanocluster with a predominantly microsecond-lived excited state, DNA(2)[Ag(17+2)](13+). Remarkably, two guanines bridge the central 17-silver-atom cluster with two additional isolated silver atoms, which are further stabilized through interactions with cytosine and adenine nucleobases. These findings provide new insight into how DNA sequences drive AgNC formation and tune spectroscopic properties, advancing the rational design of near-infrared-emissive nanoclusters with tailored optical responses.

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Primary Citation of related structures
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