20XX image
Deposition Date 2025-12-02
Release Date 2025-12-31
Last Version Date 2026-04-29
Entry Detail
PDB ID:
20XX
Keywords:
Title:
HIV-1 integrase core domain in complex with potent allosteric inhibitors
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrase
Gene (Uniprot):gag-pol
Chain IDs:A
Chain Length:166
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CAF A CYS modified residue
Primary Citation
Discovery and optimization of novel and potent allosteric HIV-1 integrase inhibitors with a spiro[indene] moiety.
Bioorg.Med.Chem. 134 118526 118526 (2026)
PMID: 41429097 DOI: 10.1016/j.bmc.2025.118526

Abstact

Allosteric inhibitors of HIV-1 integrase offer a promising approach to block an essential process in HIV-1 replication and offer a new strategy for HIV treatment. During the course of our drug discovery investigations, we identified novel allosteric HIV-1 integrase inhibitor 1 which has a conformationally constrained spiro indane scaffold. Our subsequent medicinal chemistry efforts using a structure-based drug design focused on the efficacies of related compound 5 against not only the wild type enzyme but also enzymes with polymorphisms and resistance mutations. As a result, we identified compound 38 f, which exhibited the desired efficacy against major polymorphisms and resistance mutations (EC(50)(WT) = 0.0040 muM, EC(50)(T124N) = 0.0048 muM, EC(50)(T125A) = 0.0038 muM, EC(50)(A128T) = 0.0057 muM), potent anti-HIV activity in the human serum assay (EC(50)(HS50%) = 0.091 muM), and preferable PK profiles in rats (Cl(tot) = 0.017 L/h/kg, MRT = 12.5 h, BA = 71.4 %).

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Primary Citation of related structures
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