1imh image
Deposition Date 2001-05-10
Release Date 2002-02-01
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1IMH
Title:
TonEBP/DNA COMPLEX
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*TP*TP*GP*CP*TP*GP*GP*AP
Chain IDs:A
Chain Length:15
Number of Molecules:1
Biological Source:
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*AP*AP*CP*TP*AP*TP*TP*TP
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NUCLEAR FACTOR OF ACTIVATED T
Gene (Uniprot):NFAT5
Chain IDs:C, D
Chain Length:281
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of a TonEBP-DNA complex reveals DNA encircled by a transcription factor.
Nat. Struct. Biol. 9 90 94 (2002)
PMID: 11780147 DOI: 10.1038/nsb749

Abstact

Tonicity-responsive enhancer binding protein (TonEBP), also known as NFAT5, is a unique member of the NFAT family of transcription factors that regulates gene expression induced by osmotic stress in mammalian cells. Unlike monomeric members of the NFAT family, TonEBP exists as a homodimer and binds asymmetric TonE DNA sites; furthermore, the affinity of TonEBP for DNA is much lower than that of other NFAT proteins. How TonEBP recognizes the TonE site and regulates the activation of hypertonicity response genes has not been clear. Here we show that TonEBP adopts a NF-kappaB-like structure upon binding to DNA, providing a direct structural link between the NFAT and NF-kappaB family of transcription factors. We also show that TonEBP completely encircles its DNA target and present biochemical evidence that the DNA encirclement may lead to increased kinetic stability of the TonEBP-DNA complex. Thus, the list of proteins that bind DNA by encirclement is now expanded to include sequence-specific transcription factors.

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Chemical

Disease

Primary Citation of related structures
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