ISDA: 11SS

Deposition Date 2026-03-11

Release Date 2026-10-07

Last Version Date 2026-10-07

Entry Detail

PDB ID:

11SS

Keywords:

DNA BINDING PROTEIN/DNA/RNA

Title:

Cryo-EM structure of DNA polymerase Zeta with RNA:DNA hybrid and incoming dNTP

Biological Source:

Source Organism(s):

Saccharomyces cerevisiae (Taxon ID: 4932)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Saccharomyces cerevisiae

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.03 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase zeta catalytic
Gene (Uniprot):REV3
Chain IDs:A
Chain Length:1538
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14284 Pfam ID:PF24065, PF24055, PF03104, PF00136, PF14260 EC:2.7.7.7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA repair protein REV1
Gene (Uniprot):REV1
Chain IDs:E (auth: B)
Chain Length:985
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P12689 Pfam ID:PF16589, PF00817, PF21999, PF11799 EC:2.7.7.-

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase zeta processiv
Gene (Uniprot):REV7
Chain IDs:B (auth: D), C (auth: E)
Chain Length:245
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38927 Pfam ID:PF02301

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase delta small su
Gene (Uniprot):POL31
Chain IDs:G (auth: F)
Chain Length:494
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P46957 Pfam ID:PF18018, PF04042 EC:2.7.7.7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase delta subunit
Gene (Uniprot):POL32
Chain IDs:D (auth: G)
Chain Length:350
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P47110

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*TP*AP*CP*GP
Chain IDs:F (auth: P)
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*AP*UP*GP*GP*CP
Chain IDs:H (auth: X)
Chain Length:25
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules