Open Access Dashboard
Text Utilities
Sort Data
Merge Column
Cut Column
Transpose Tabular Data
Paste Files Side by Side
fastq/fasta
Concatenate fastq
Split Dataset
Unique Count
Count Reads
fastq to fasta
Filter by Length
Filter by Quality
Interleave reads
Rename IDs
Reverse Complement
Sub Sample Reads
General Feature Format (GFF)
Extract feature from gff
Filter GFF by attribute
Quality Check
fastqc
Trimming
fastp
Porechop
Genome Alignment & Mapping
Build Genome Index
BWA-MEM2 Alignment
Bowtie2 Alignment
Read Counting & Gene Expression
DESeq2 Analysis
edgeR Analysis
Visualization & Plots
Volcano Plot
MA Plot
SAM Tools
SAM → BAM
bam → fastq
bam → fasta
bam → flagstat
bam → depth
bam → index
bam → merge
bam → sort
bam → markdup
bam → extract reads
bam → idxstats
Variant Calling & SNP Analysis
BCF Tools mpileup
GATK
bcftools Stats
bcftools View
bcftools Query
bcftools csq
bcftools Filter
bcftools Call
bcftools Merge
Documentation
BIONODE Open Access Tools
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Welcome to BIONODE Open Access
You can explore tools using datasets. Upload functionality and full analysis require login.
