BCFTOOLS Mpileup & Variant Calling

Generate SNP and INDEL variants from BAM alignments

BCFtools Variant Calling Pipeline
This workflow performs:
  • Mpileup Generation
  • SNP Detection
  • INDEL Detection
  • VCF Generation
  • Diploid & Haploid Calling
Accepted formats: .fasta, .fa, .fna
Coordinate sorted BAM file

Help