9YGZ image
Deposition Date 2025-09-29
Release Date 2026-05-20
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9YGZ
Title:
Cryo-EM structure of active mutant human green cone opsin (E129Q) in complex with chimeric G protein (miniGist)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.04 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein,Guanine nu
Gene (Uniprot):GNAS
Chain IDs:E (auth: A)
Chain Length:509
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding pr
Gene (Uniprot):GNB1
Chain IDs:B
Chain Length:357
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding pr
Gene (Uniprot):GNG2
Chain IDs:C (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:scFv16
Chain IDs:D (auth: H)
Chain Length:268
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Medium-wave-sensitive opsin 1
Gene (Uniprot):OPN1MW
Mutagens:E129Q
Chain IDs:A (auth: R)
Chain Length:365
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Biophysical and structural analysis of human green cone opsin.
Biophys.J. ? ? ? (2026)
PMID: 41832604 DOI: 10.1016/j.bpj.2026.03.029

Abstact

We describe a straightforward method for purifying and optimizing human green cone opsin (GCO), which we then used for biophysical and structural studies of a GCO mutant, GCO(E129Q). Our results show that in dark-state GCO, residue E129 enables long-wavelength light absorption, presumably by acting as the counterion for the protonated retinal Schiff base. Notably, the Schiff base pKa in dark-state GCO(E129Q) appears to be markedly lower (pKa approximately 4) than in the rhodopsin equivalent, Rho(E113Q) (pKa approximately 7), indicating distinct electrostatic environments at the retinal attachment site. Functional studies show that light-activated GCO(E129Q) decays more slowly and activates more G-protein than wild-type GCO (GCO(WT)). To identify the basis for these differences, we determined the structure of active GCO(E129Q) bound to a G-protein. We first developed a streamlined workflow to identify conditions that enhance GCO(E129Q) binding to G-proteins. This approach involved screening GCO(E129) binding to Galpha-CT resin (beads bearing tethered Galpha C-terminal peptides), followed by small-scale pull-down assays using 1D4 antibody beads to detect co-purification of GCO(E129) with a Venus-tagged mini-G-protein. Using the optimized conditions, we determined a 3.0-A cryo-EM structure of the GCO(E129)-G-protein complex. Comparison with rhodopsin and our recent 3.0-A structure of GCO(WT) reveals that the active-state architectures are largely similar, with several intriguing differences. Together, these results establish a generalizable, streamlined approach for biophysical and structural analysis of cone opsins and provide new mechanistic insight into the activation and signaling properties of GCO.

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