ISDA: 9XYC

Deposition Date 2025-08-25

Release Date 2026-03-18

Last Version Date 2026-03-18

Entry Detail

PDB ID:

9XYC

Keywords:

TRANSCRIPTION/DNA

Title:

Pol II-DSIF-SPT6-PAF1c-TFIIS-IWS1-ELOF1-LEDGF-nucleosome LEDGF+nucleosome map Q

Biological Source:

Source Organism(s):

Xenopus laevis (Taxon ID: 8355)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli, Trichoplusia ni

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (139-MER)
Chain IDs:A (auth: N)
Chain Length:139
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (139-MER)
Chain IDs:B (auth: T)
Chain Length:139
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:C (auth: a), G (auth: e)
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P84233 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:D (auth: b), H (auth: f)
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Chain IDs:E (auth: c), I (auth: g)
Chain Length:130
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P06897 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:F (auth: d), J (auth: h)
Chain Length:126
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P02281 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:PC4 and SFRS1-interacting pro
Gene (Uniprot):PSIP1
Chain IDs:K (auth: l)
Chain Length:532
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75475 Pfam ID:PF00855, PF11467

Modified Residue